Ri0dZddlZddlmZGddZy)zExtract information from alignment objects. In order to try and avoid huge alignment objects with tons of functions, functions which return summary type information about alignments should be put into classes in this module. N)BiopythonDeprecationWarningceZdZdZdZdZy) SummaryInfozCalculate summary info about the alignment. (DEPRECATED) This class should be used to calculate information summarizing the results of an alignment. This may either be straight consensus info or more complicated things. cTtjdt||_g|_y)zInitialize with the alignment to calculate information on. ic_vector attribute. A list of ic content for each column number. aSThe class SummaryInfo has been deprecated. Instead of >>> align_info = AlignInfo.SummaryInfo(msa) >>> sequence = align_info.get_column(1) please use >>> alignment = msa.alignment # to get a new-style Alignment object >>> sequence = alignment[:, 1] Here, `msa` is a MultipleSeqAlignment object and `alignment` is an `Alignment` object.N)warningswarnr alignment ic_vector)selfr s K/home/agent/.friday_env/lib/python3.12/site-packages/Bio/Align/AlignInfo.py__init__zSummaryInfo.__init__s*    ( #c(|jdd|fS)zReturn column of alignment.N)r )r cols r get_columnzSummaryInfo.get_column3s~~af%%rN)__name__ __module__ __qualname____doc__r rrr rrs0&rr)rrBiorrrrr rs+#&#&r