RiBdZGddZedk(rddlmZeyy)z6Useful utilities for helping in parsing GenBank files.c2eZdZdZdgZefdZdZdZdZy)FeatureValueCleanera)Provide specialized capabilities for cleaning up values in features. This class is designed to provide a mechanism to clean up and process values in the key/value pairs of GenBank features. This is useful because in cases like:: /translation="MED YDPWNLRFQSKYKSRDA" you'll otherwise end up with white space in it. This cleaning needs to be done on a case by case basis since it is impossible to interpret whether you should be concatenating everything (as in translations), or combining things with spaces (as might be the case with /notes). >>> cleaner = FeatureValueCleaner(["translation"]) >>> cleaner FeatureValueCleaner(['translation']) >>> cleaner.clean_value("translation", "MED\nYDPWNLRFQSKYKSRDA") 'MEDYDPWNLRFQSKYKSRDA' translationc||_y)z-Initialize with the keys we should deal with.N) _to_process)self to_processs I/home/agent/.friday_env/lib/python3.12/site-packages/Bio/GenBank/utils.py__init__zFeatureValueCleaner.__init__#s %cN|jjd|jdS)z,Return a string representation of the class.()) __class____name__r)rs r __repr__zFeatureValueCleaner.__repr__'s'..))*!D,<,<+?qAAr c||jvr t|d|}||}|S#t$rtd|dwxYw)zClean the specified value and return it. If the value is not specified to be dealt with, the original value will be returned. _clean_zNo function to clean key: N)rgetattrAttributeErrorAssertionError)rkey_namevaluecleaners r clean_valuezFeatureValueCleaner.clean_value+sd t'' ' X!$'((<=ENE " X$'A(%LMSWW Xs )AcD|j}dj|S)zEConcatenate a translation value to one long protein string (PRIVATE).)splitjoin)rrtranslation_partss r _clean_translationz&FeatureValueCleaner._clean_translation9s!KKMww())r N) r __module__ __qualname____doc__keys_to_processr rrr r r rr s(.%oO"1&B *r r__main__) run_doctestN)r#rr Bio._utilsr(r%r r r*s, =3*3*l z&Mr