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mZ dd	lmZ dd
lmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlmZ ddlm Z  ddlm!Z! ddlm"Z" ddl#m$Z$ ddl#m#Z# ddl%m%Z% dd l&m&Z& dd!l'm(Z( dd"l'm)Z) dd#l'm*Z* dd$l'm+Z+ dd%l'm,Z, dd&l'm-Z- dd'l'm.Z. dd(l'm/Z/ dd)l'm0Z0 	 dd*l1m1Z1 	 dd+l2m3Z3 y# e$ r ddlmZ  ed«      d‚w xY w# e$ r Y Œ'w xY w# e$ r Y yw xY w),a|  Classes that deal with macromolecular crystal structures.

Includes: PDB and mmCIF parsers, a Structure class, a module to keep a local
copy of the PDB up-to-date, selective IO of PDB files, etc.

Original Author: Thomas Hamelryck.
Contributions by:
- Peter Cock
- Joe Greener
- Rob Miller
- Lenna X. Peterson
- Joao Rodrigues
- Kristian Rother
- Eric Talevich
- and many others.
é    N)ÚMissingPythonDependencyErrorzJPlease install NumPy if you want to use Bio.PDB. See http://www.numpy.org/é   )Ú	Selection)Ú	CEAligner)Úextract)ÚDSSP)Úmake_dssp_dict)ÚFragmentMapper)Ú
ExposureCN)ÚHSExposureCA)ÚHSExposureCB)ÚMMCIFIO)ÚFastMMCIFParser)ÚMMCIFParser)Úparse_pdb_header)ÚPDBIO)ÚSelect)ÚPDBList)ÚPDBMLParser)Ú	PDBParser)ÚCaPPBuilder)Úis_aa)Ú
is_nucleic)Ú	PPBuilder)Ústandard_aa_names)Úget_surface)ÚResidueDepth)ÚStructureAlignment)ÚSuperimposer)Ú
calc_angle)Úcalc_dihedral)Ú	m2rotaxis)Úrefmat)Úrotaxis)Ú	rotaxis2m)Úrotmat)ÚVector)Úvector_to_axis)ÚNeighborSearch)ÚShrakeRupley)4Ú__doc__ÚnumpyÚnpÚImportErrorÚBior   Ú r   Úcealignr   ÚDicer   r   r	   r
   Ú
HSExposurer   r   r   Úmmcifior   r   r   r   r   r   r   r   r   ÚPolypeptider   r   r   r   r   r   r   r   r   Úvectorsr    r!   r"   r#   r$   r%   r&   r'   r(   r)   ÚSASAr*   © ó    úH/home/agent/.friday_env/lib/python3.12/site-packages/Bio/PDB/__init__.pyú<module>r;      sù   ðñð"Ûõ õ õ õ Ý  õ +Ý "õ %Ý $Ý Ý (Ý $õ /õ Ý õ Ý $Ý  Ý $Ý Ý #õ #Ý *Ý %õ 'õ 3õ 'Ý Ý "Ý Ý Ý Ý Ý õ Ý #ð	Ý.ð	Þ"øðk ò Ý0á
&ØTóàððûð^ ò 	Ùð	ûð ò 	Ùð	ús/   „C/ Ã!D Ã(D Ã/DÄDÄDÄDÄD