Ri#dZddlZddlZdZGddeZGddeeZGdd eZ Gd d e Z Gd d e Z Gdde Z Gdde Zejj!ejj!eZejj'ejj)edrddlZdZej.D];Zejj3ejj)eds9dZnesFejj3ejj)ej4drdZesej6deze yyy)zCollection of modules for dealing with biological data in Python. The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology. https://biopython.org Nz1.87ceZdZdZy)MissingExternalDependencyErrorzMissing an external dependency. Used for things like missing command line tools. Important for our unit tests to allow skipping tests with missing external dependencies. N__name__ __module__ __qualname____doc__D/home/agent/.friday_env/lib/python3.12/site-packages/Bio/__init__.pyrrsr rceZdZdZy)MissingPythonDependencyErroraBMissing an external python dependency (subclass of ImportError). Used for missing Python modules (rather than just a typical ImportError). Important for our unit tests to allow skipping tests with missing external python dependencies, while also allowing the exception to be caught as an ImportError. Nrr r r rrsr rceZdZdZy)StreamModeErrorzIncorrect stream mode (text vs binary). This error should be raised when a stream (file or file-like object) argument is in text mode while the receiving function expects binary mode, or vice versa. Nrr r r rr'sr rceZdZdZy)BiopythonWarninga]Biopython warning. Biopython should use this warning (or subclasses of it), making it easy to silence all our warning messages should you wish to: >>> import warnings >>> from Bio import BiopythonWarning >>> warnings.simplefilter('ignore', BiopythonWarning) Consult the warnings module documentation for more details. Nrr r r rr0s r rceZdZdZy)BiopythonParserWarningaBiopython parser warning. Some in-valid data files cannot be parsed and will trigger an exception. Where a reasonable interpretation is possible, Biopython will issue this warning to indicate a potential problem. To silence these warnings, use: >>> import warnings >>> from Bio import BiopythonParserWarning >>> warnings.simplefilter('ignore', BiopythonParserWarning) Consult the warnings module documentation for more details. Nrr r r rr>s r rceZdZdZy)BiopythonDeprecationWarninga=Biopython deprecation warning. Biopython uses this warning instead of the built in DeprecationWarning since those are ignored by default since Python 2.7. To silence all our deprecation warning messages, use: >>> import warnings >>> from Bio import BiopythonDeprecationWarning >>> warnings.simplefilter('ignore', BiopythonDeprecationWarning) Code marked as deprecated is likely to be removed in a future version of Biopython. To avoid removal of this code, please contact the Biopython developers via the mailing list or GitHub. Nrr r r rrMsr rceZdZdZy)BiopythonExperimentalWarningaJBiopython experimental code warning. Biopython uses this warning for experimental code ('alpha' or 'beta' level code) which is released as part of the standard releases to mark sub-modules or functions for early adopters to test & give feedback. Code issuing this warning is likely to change (or even be removed) in a subsequent release of Biopython. Such code should NOT be used for production/stable code. It should only be used if: - You are running the latest release of Biopython, or ideally the latest code from our repository. - You are subscribed to the biopython-dev mailing list to provide feedback on this code, and to be alerted of changes to it. If all goes well, experimental code would be promoted to stable in a subsequent release, and this warning removed from it. Nrr r r rr_sr rzpyproject.tomlFzbiopython.egg-linkTayYou may be importing Biopython from inside the source tree. This is bad practice and might lead to downstream issues. In particular, you might encounter ImportErrors due to missing compiled C extensions. We recommend that you try running your code from outside the source tree. If you are outside the source tree then you have a pyproject.toml file in an unexpected directory: )r oswarnings __version__ Exceptionr ImportErrorr ValueErrorrWarningrrrrpathdirname__file__ _parent_direxistsjoinsite _dev_modegetsitepackages_pisfilegetusersitepackageswarnr r r r-sk  Y#A;j w  - "2$#3*ggoobggooh78 77>>"'',,{,<=>I"d""$ 77>>"'',,r+?@ AI    -T--/1EF   @ CN  N   )?r