Ri~dZddlZdZdZy)zLocal Composition Complexity.Nctjd}|j}t|}dg}g}t |D]8}|j |dz|z tj|dz|z z|z :|d|}|j d}|j d} |j d} |j d} ||} || } || }|| }|j | | z|z|z |d}t ||z D]4}||dz||zdz}||dk(r|j |dn|dk(r|dz}|jdr,| dz } ||} || } |j | | z|z|z n|jdr,| dz } ||} || }|j | | z|z|z n||jdrj| dz } ||} || }|j | | z|z|z n>|dk(r| dz} |jdr,|dz }||} || } |j | | z|z|z n|jdr,| dz } || } || }|j | | z|z|z n|jdr| dz } || } || }|j | | z|z|z n||dk(r| dz} |jdr,|dz }||} || }|j | | z|z|z n5|jdr+| dz } || } || }|j | | z|z|z n|jdr| dz } || }|| }|j | | z|z|z n|dk(r| dz} |jdr+|dz }||} || }|j | | z|z|z nw|jdr+| dz } || } || }|j | | z|z|z n;|jdr*| dz } || }|| }|j | | z|z|z |d}7|S) aCalculate Local Composition Complexity (LCC) values over sliding window. Returns a list of floats, the LCC values for a sliding window over the sequence. seq - an unambiguous DNA sequence (a string or Seq object) wsize - window size, integer The result is the same as applying lcc_simp multiple times, but this version is optimized for speed. The optimization works by using the value of previous window as a base to compute the next one. rACTG)mathlogupperlenrangeappendcountendswith)seqwsizel4tamseqcomponelccsaliwindowcant_acant_ccant_tcant_gterm_aterm_cterm_tterm_gtailxs H/home/agent/.friday_env/lib/python3.12/site-packages/Bio/SeqUtils/lcc.pylcc_multr& s !B ))+C XFcG F 5\KQ%488QUeO+DDrIJK 5\F \\# F \\# F \\# F \\# F V_F V_F V_F V_F MMFVOf,v567 q6D 6E> "HQUUQY]+ 6":  MM&* % S[ aKFs#!    & 86 ABC%!    & 86 ABC%!    & 86 ABC S[ aKFs#!    & 86 ABC%!    & 86 ABC%!    & 86 ABC S[ aKFs#!    & 86 ABC%!    & 86 ABC%!    & 86 ABC S[ aKFs#!    & 86 ABC%!    & 86 ABC%!    & 86 ABCayQHR Mct|}|j}tjd}d|vrd}n?|j d|z tj|j d|z z|z }d|vrd}n?|j d|z tj|j d|z z|z }d|vrd}n?|j d|z tj|j d|z z|z }d|vrd}n?|j d|z tj|j d|z z|z }||z|z|z S)abCalculate Local Composition Complexity (LCC) for a sequence. seq - an unambiguous DNA sequence (a string or Seq object) Returns the Local Composition Complexity (LCC) value for the entire sequence (as a float). Reference: Andrzej K Konopka (2005) Sequence Complexity and Composition https://doi.org/10.1038/npg.els.0005260 rrrrrr )rr r r r)rrrrr r!r"s r%lcc_simpr)xs4 HE ))+C !B #~))C.5(DHHSYYs^e5K,LLrQ #~))C.5(DHHSYYs^e5K,LLrQ #~))C.5(DHHSYYs^e5K,LLrQ #~))C.5(DHHSYYs^e5K,LLrQ f_v % . //r')__doc__r r&r)r'r%r,s$ hV 0r'