{Ti JdZGddZGddZGddZdZy) z;Code to interact with the primersearch program from EMBOSS.c"eZdZdZdZdZdZy) InputRecordzRepresent the input file into the primersearch program. This makes it easy to add primer information and write it out to the simple primer file format. cg|_yInitialize the class.N primer_infoselfs J/home/agent/.local/lib/python3.12/site-packages/Bio/Emboss/PrimerSearch.py__init__zInputRecord.__init__s cPd}|jD]\}}}||d|d|dz }|S)z4Summarize the primersearch input record as a string.  r)r outputnameprimer1primer2s r __str__zInputRecord.__str__sE&*&6&6 6 "D'7 ay'"5 5F 6 r c@|jj|||fy)z%Add primer information to the record.N)rappend)r primer_namefirst_primer_seqsecond_primer_seqs r add_primer_setzInputRecord.add_primer_sets .>@Q RSr N)__name__ __module__ __qualname____doc__r rrr r rr s Tr rceZdZdZdZy) OutputRecordzRepresent the information from a primersearch job. amplifiers is a dictionary where the keys are the primer names and the values are a list of PrimerSearchAmplifier objects. ci|_yr) amplifiersr s r r zOutputRecord.__init__)s r Nrrrr r r!r r r#r#"s  r r#ceZdZdZdZy) Amplifierz/Represent a single amplification from a primer.c d|_d|_y)rrN)hit_infolengthr s r r zAmplifier.__init__1s  r Nr&r!r r r(r(.s 9r r(ct}|D]}|js|jdr#|jd}g|j|<H|jdr)t }|jj ||jdr|jdd_|jdr$|jd}t|_ xj|z c_|jD]5}|j|D]!}|jj|_#7|S)z=Get output from primersearch into a PrimerSearchOutputRecord.z Primer nameAmplimerz Sequence: rz Amplimer length: ) r#strip startswithsplitr%r(rreplacer+intr,rstrip)handlerecordliner amplifierr,s r readr;7s$ ^F'zz|  __] +::<#D&(F  d # __Z (! I   d # * *9 5 __^ ,!%nb!AI  __2 3ZZ\"%F"6{I    $ & '"!!=**40 =I!*!3!3!:!:!r<s0BTT.  r